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Publications

↓ Peer-reviewed publications
↓ Patents
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Peer-reviewed publications

    2022

  1. Download PDF
    Modeling osteoporosis to design and optimize pharmacological therapies comprising multiple drug types
    David J. Jörg, Doris H. Fuertinger, Alhaji Cherif, David A. Bushinsky, Ariella Mermelstein, Jochen G. Raimann, and Peter Kotanko
  2. Download PDF
    The Piezo1 hypothesis of renal anemia
    Peter Kotanko, David J. Jörg, Nadja Grobe, and Christoph Zaba
    FASEB BioAdvances (2022) | DOI: 10.1096/fba.2022-00024
  3. 2021

  4. Download PDF
    A multistate stem cell dynamics maintains homeostasis in mouse spermatogenesis
    Toshinori Nakagawa, David J. Jörg, Hitomi Watanabe, Seiya Mizuno, Seungmin Han, Tatsuro Ikeda, Yoshiki Omatsu, Keiko Nishimura, Miyako Fujita, Satoru Takahashi, Gen Kondoh, Benjamin D. Simons, Shosei Yoshida, and Takashi Nagasawa
    Cell Reports 37, 109875 (2021) | DOI: 10.1016/j.celrep.2021.109875
  5. Download PDF
    Transient suppression of transplanted spermatogonial stem cell differentiation restores fertility in mice
    Yoshiaki Nakamura, David J. Jörg, Yayoi Kon, Benjamin D. Simons, and Shosei Yoshida
    Cell Stem Cell 28, 1443–1456.E7 (2021) | DOI: 10.1016/j.stem.2021.03.016
  6. Early stem cell aging in the mature brain
    Albina Ibrayeva, Maxwell Bay*, Elbert Pu*, David J. Jörg, Lei Peng, Heechul Jun, Naibo Zhang, Daniel Aaron, Congrui Lin, Galen Resler, Axel Hidalgo, Mi-Hyeon Jang, Benjamin D. Simons, and Michael A. Bonaguidi
    Cell Stem Cell 28, 955–966.E7 (2021) | DOI: 10.1016/j.stem.2021.03.018 | *equal contribution
  7. Download PDF
    Distinct progenitor behavior underlying neocortical gliogenesis related to tumorigenesis
    Zhongfu Shen*, Yang Lin*, Jiajun Yang, David J. Jörg, Yuwei Peng, Xiuli Zhang, Yifan Xu, Luisirene Hernandez, Jian Ma, Benjamin D. Simons, and Song-Hai Shi
    Cell Reports 34, 108853 (2021) | DOI: 10.1016/j.celrep.2021.108853 | *equal contribution
  8. Download PDF
    Stem cell populations as self-renewing many-particle systems
    David J. Jörg, Yu Kitadate, Shosei Yoshida, and Benjamin D. Simons
    Annual Review of Condensed Matter Physics 12, 135–153 (2021) | DOI: 10.1146/annurev-conmatphys-041720-125707
  9. Long-term self-renewing stem cells in the adult mouse hippocampus identified by intravital imaging
    Sara Bottes*, Baptiste N. Jaeger*, Gregor-Alexander Pilz*, David J. Jörg, John Darby Cole, Merit Kruse, Lachlan Harris, Vladislav I. Korobeynyk, Izaskun Mallona, Fritjof Helmchen, François Guillemot, Benjamin D. Simons, and Sebastian Jessberger
    Nature Neuroscience 24, 225–233 (2021) | DOI: 10.1038/s41593-020-00759-4 | *equal contribution
  10. 2020

  11. Download PDF
    The role of eryptosis in the pathogenesis of renal anemia: Insights from basic research and mathematical modeling
    Gabriela Ferreira Dias, Nadja Grobe, Sabrina Rogg, David J. Jörg, Roberto Pecoits-Filho, Andréa N. Moreno-Amaral, and Peter Kotanko
    Frontiers in Cell and Developmental Biology 8, 1276 (2020) | DOI: 10.3389/fcell.2020.598148
  12. 2019

  13. Download PDF
    Defining the identity and dynamics of adult gastric isthmus stem cells
    Seungmin Han*, Jürgen Fink*, David J. Jörg, Eunmin Lee, Min Kyu Yum, Lemonia Chatzeli, Sebastian R. Merker, Manon Josserand, Teodora Trendafilova, Amanda Andersson-Rolf, Catherine Dabrowska, Hyunki Kim, Ronald Naumann, Ji-Hyun Lee, Nobuo Sasaki, Richard Lester Mort, Onur Basak, Hans Clevers, Daniel E. Stange, Anna Philpott, Jong Kyoung Kim, Benjamin D. Simons, and Bon-Kyoung Koo
  14. Download PDF
    The proneural wave in the Drosophila optic lobe is driven by an excitable reaction-diffusion mechanism
    David J. Jörg, Elizabeth E. Caygill, Anna E. Hakes, Esteban G. Contreras, Andrea H. Brand, and Benjamin D. Simons
    eLife 8, e40919 (2019) | DOI: 10.7554/eLife.40919
  15. Download PDF
    Competition for mitogens regulates spermatogenic stem cell homeostasis in an open niche
    Yu Kitadate, David J. Jörg, Moe Tokue, Ayumi Maruyama, Rie Ichikawa, Soken Tsuchiya, Eri Segi-Nishida, Toshinori Nakagawa, Aya Uchida, Chiharu Kimura-Yoshida, Seiya Mizuno, Fumihiro Sugiyama, Takuya Azami, Masatsugu Ema, Chiyo Noda, Satoru Kobayashi, Isao Matsuo, Yoshiakira Kanai, Takashi Nagasawa, Yukihiko Sugimoto, Satoru Takahashi, Benjamin D. Simons, and Shosei Yoshida
  16. 2018

  17. Download PDF
    Chemical event chain model of coupled genetic oscillators
    David J. Jörg, Luis G. Morelli, and Frank Jülicher
    Physical Review E 97, 032409 (2018) | DOI: 10.1103/PhysRevE.97.032409
    • Editor's Suggestion
  18. Live imaging of neurogenesis in the adult mouse hippocampus
    Gregor-Alexander Pilz*, Sara Bottes*, Marion Betizeau, David J. Jörg, Stefano Carta, Benjamin D. Simons, Fritjof Helmchen, and Sebastian Jessberger
    Science 359, 658–662 (2018) | DOI: 10.1126/science.aao5056 | *equal contribution
  19. Defining murine organogenesis at single-cell resolution reveals a role for the leukotriene pathway in regulating blood progenitor formation
    Ximena Ibarra-Soria*, Wajid Jawaid*, Blanca Pijuan-Sala, Vasileios Ladopoulos, Antonio Scialdone, David J. Jörg, Richard C. V. Tyser, Fernando J. Calero-Nieto, Carla Mulas, Jennifer Nichols, Ludovic Vallier, Shankar Srinivas, Benjamin D. Simons, Berthold Göttgens, and John C. Marioni
    Nature Cell Biology 20, 127–134 (2018) | DOI: 10.1038/s41556-017-0013-z | *equal contribution
  20. 2017

  21. Download PDF
    Amplitude bounds for biochemical oscillators
    David J. Jörg
  22. Download PDF
    Fate mapping of human glioblastoma reveals an invariant stem cell hierarchy
    Xiaoyang Lan, David J. Jörg, Florence M. G. Cavalli, Laura M. Richards, Long V. Nguyen, Robert J. Vanner, Paul Guilhamon, Lilian Lee, Michelle M. Kushida, Davide Pellacani, Nicole I. Park, Fiona J. Coutinho, Heather Whetstone, Hayden J. Selvadurai, Clare Che, Betty Luu, Annaick Carles, Michelle Moksa, Naghmeh Rastegar, Renee Head, Sonam Dolma, Panagiotis Prinos, Michael D. Cusimano, Sunit Das, Mark Bernstein, Cheryl H. Arrowsmith, Andrew J. Mungall, Richard A. Moore, Yussanne Ma, Marco Gallo, Mathieu Lupien, Trevor J. Pugh, Michael D. Taylor, Martin Hirst, Connie J. Eaves, Benjamin D. Simons, and Peter B. Dirks
  23. Download PDF
    Stochastic Kuramoto oscillators with discrete phase states
    David J. Jörg
    Physical Review E 96, 032201 (2017) | DOI: 10.1103/PhysRevE.96.032201
  24. Download PDF
    Self-organized synchronization of digital phase-locked loops with delayed coupling in theory and experiment
    Lucas Wetzel, David J. Jörg, Alexandros Pollakis, Wolfgang Rave, Gerhard Fettweis, and Frank Jülicher
    PLOS ONE 12, e0171590 (2017) | DOI: 10.1371/journal.pone.0171590
  25. 2016

  26. Download PDF
    Sequential pattern formation governed by signaling gradients
    David J. Jörg, Andrew C. Oates, and Frank Jülicher
    Physical Biology 13, 05LT03 (2016) | DOI: 10.1088/1478-3975/13/5/05LT03
  27. Download PDF
    Faster embryonic segmentation through elevated Delta-Notch signalling
    Bo-Kai Liao, David J. Jörg, and Andrew C. Oates
    Nature Communications 7, 11861 (2016) | DOI: 10.1038/ncomms11861
  28. Download PDF
    Persistence, period and precision of autonomous cellular oscillators from the zebrafish segmentation clock
    Alexis B. Webb, Iván M. Lengyel, David J. Jörg, Guillaume Valentin, Frank Jülicher, Luis G. Morelli, and Andrew C. Oates
    eLife 5, e08438 (2016) | DOI: 10.7554/eLife.08438
  29. 2015

  30. Download PDF
    Continuum theory of gene expression waves during vertebrate segmentation
    David J. Jörg, Luis G. Morelli, Daniele Soroldoni, Andrew C. Oates, and Frank Jülicher
    New Journal of Physics 17, 093042 (2015) | DOI: 10.1088/1367-2630/17/9/093042
  31. Synchronization of mutually coupled digital PLLs in massive MIMO systems
    David J. Jörg, Alexandros Pollakis, Lucas Wetzel, Marvin Dropp, Wolfgang Rave, Frank Jülicher, and Gerhard Fettweis
    IEEE ICC 2015, 1716 (2015) | DOI: 10.1109/ICC.2015.7248572
  32. Download PDF
    Nonlinear transient waves in coupled phase oscillators with inertia
    David J. Jörg
    Chaos 25, 053106 (2015) | DOI: 10.1063/1.4919831
  33. 2014

  34. Download PDF
    Synchronization in networks of mutually delay-coupled phase-locked loops
    Alexandros Pollakis, Lucas Wetzel, David J. Jörg, Wolfgang Rave, Gerhard Fettweis, and Frank Jülicher
    New Journal of Physics 16, 113009 (2014) | DOI: 10.1088/1367-2630/16/11/113009
  35. Download PDF
    A Doppler effect in embryonic pattern formation
    Daniele Soroldoni*, David J. Jörg*, Luis G. Morelli, David L. Richmond, Johannes Schindelin, Frank Jülicher, and Andrew C. Oates
  36. Download PDF
    Synchronization dynamics in the presence of coupling delays and phase shifts
    David J. Jörg, Luis G. Morelli, Saúl Ares, and Frank Jülicher
    Physical Review Letters 112, 174101 (2014) | DOI: 10.1103/PhysRevLett.112.174101
  37. 2012

  38. Download PDF
    Collective modes of coupled phase oscillators with delayed coupling
    Saúl Ares, Luis G. Morelli, David J. Jörg, Andrew C. Oates, and Frank Jülicher
    Physical Review Letters 108, 204101 (2012) | DOI: 10.1103/PhysRevLett.108.204101


Patents & Patent Applications

  1. Virtual Osteoporosis Clinic
    David J. Jörg, Doris H. Fürtinger, Alhaji Cherif, and Peter Kotanko
    WO Patent Application 2021/231374 A1 (2020)
  2. Self-synchronizable Network
    Alexandros Pollakis, Lucas Wetzel, David J. Jörg, Wolfgang Rave, Gerhard Fettweis, and Frank Jülicher
    European Patent 2957982 B1 (2017)


Theses

Genetic Oscillations and Vertebrate Embryonic Development
Doctoral Thesis, Dresden University of Technology (2014)

On Integrating Out A Correlated Quantum Dot
Diploma Thesis, University of Heidelberg (2010)